GORULE violations assigned by CAFA

Contents

gorule-0000005 IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

MESSAGES

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI MGI:97750 Ppib enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F Peptidyl-prolyl cis-trans isomerase B protein taxon:10090 20180925 CAFA has_input(UniProtKB:Q9CYD3),has_input(UniProtKB:Q3V1T4) `
• WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI MGI:1891221 Crtap enables GO:0005515 GO_REF:0000024 ISS UniProtKB:Q90830 F Cartilage-associated protein protein taxon:10090 20180925 CAFA has_input(UniProtKB:Q3V1T4),has_input(UniProtKB:P24369) `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 1

messages

• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:97798 Ptgs2 involved_in GO:0043154 PMID:21716255 IMP P Prostaglandin G/H synthase 2 protein taxon:10090 20161108 CAFA `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:98181 Rrm2 enables GO:0042803 PMID:8876648 IDA F Ribonucleoside-diphosphate reductase subunit M2 protein taxon:10090 20161103 CAFA `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:88005 Amelx enables GO:0042803 PMID:19086270 IDA F Amelogenin, X isoform protein taxon:10090 20161125 CAFA `