GORULE violations assigned by ParkinsonsUK-UCL

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 6

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:98958 Wnt5a involved_in GO:0032092 PMID:23109420 IDA P Protein Wnt-5a protein taxon:10090 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q13009),part_of(GO:0016055),occurs_in(CL:0000700)|has_input(UniProtKB:Q92997),part_of(GO:0016055),occurs_in(CL:0000700) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:99441 Ckmt1 involved_in GO:0032091 PMID:21370995 IDA P Creatine kinase U-type, mitochondrial protein taxon:10090 20140728 ParkinsonsUK-UCL has_input(UniProtKB:P21796),has_input(UniProtKB:P12236) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1914740 Ufl1 involved_in GO:0032092 PMID:21494687 TAS P E3 UFM1-protein ligase 1 protein taxon:10090 20161103 ParkinsonsUK-UCL has_input(UniProtKB:P61961),has_input(UniProtKB:Q80WW9) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1920431 Nfatc4 involved_in GO:0032091 PMID:21880741 IDA P Nuclear factor of activated T-cells, cytoplasmic 4 protein taxon:10090 20151214 ParkinsonsUK-UCL has_input(UniProtKB:P51141),has_input(UniProtKB:Q02248),part_of(GO:0030178) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1920431 Nfatc4 involved_in GO:0032091 PMID:21880741 IDA P Nuclear factor of activated T-cells, cytoplasmic 4 protein taxon:10090 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q61062),occurs_in(GO:0005634),part_of(GO:0030178)|has_input(UniProtKB:Q02248),occurs_in(GO:0005634),part_of(GO:0030178) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1891731 Stub1 involved_in GO:0032091 PMID:12150907 IDA P E3 ubiquitin-protein ligase CHIP protein taxon:10090 20140813 ParkinsonsUK-UCL part_of(GO:0031398) `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 10

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:98953 Wnt1 enables GO:0048018 PMID:21752258 IC GO:1903204 F Proto-oncogene Wnt-1 protein taxon:10090 20160914 ParkinsonsUK-UCL has_input(UniProtKB:O70421),part_of(GO:0060070) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:98953 Wnt1 involved_in GO:0036520 PMID:21752258 IMP P Proto-oncogene Wnt-1 protein taxon:10090 20190918 ParkinsonsUK-UCL occurs_in(UBERON:0001891),causally_upstream_of(GO:1903204) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:1355296 Prkn involved_in GO:0032436 PMID:23858059 IMP P E3 ubiquitin-protein ligase parkin protein taxon:10090 20140729 ParkinsonsUK-UCL has_input(UniProtKB:Q8VBV4),part_of(GO:1903204),occurs_in(CL:0000530),occurs_in(UBERON:0000955) `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1270126 Ulk1 enables GO:0004674 PMID:21855797 IMP F Serine/threonine-protein kinase ULK1 protein taxon:10090 20160229 ParkinsonsUK-UCL has_input(UniProtKB:Q91YI1),causally_upstream_of(GO:0098779) `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:109531 Cdc37 involved_in GO:0098779 PMID:21855797 IDA P Hsp90 co-chaperone Cdc37 protein taxon:10090 20150216 ParkinsonsUK-UCL `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1333752 Hdac6 involved_in GO:0098779 PMID:20457763 IGI UniProtKB:Q9JK66 P Histone deacetylase 6 protein taxon:10090 20150603 ParkinsonsUK-UCL `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1928676 Htra2 enables GO:0008233 PMID:24709290 IMP F Serine protease HTRA2, mitochondrial protein taxon:10090 20161102 ParkinsonsUK-UCL has_input(UniProtKB:Q8VCM5),part_of(GO:0034599)|has_input(UniProtKB:Q8VCM5),part_of(GO:1904924) `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1928676 Htra2 involved_in GO:0006508 PMID:24709290 IMP P Serine protease HTRA2, mitochondrial protein taxon:10090 20161102 ParkinsonsUK-UCL has_input(UniProtKB:Q8VCM5),part_of(GO:0034599)|has_input(UniProtKB:Q8VCM5),part_of(GO:1904924) `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1928676 Htra2 involved_in GO:1904924 PMID:24709290 IMP P Serine protease HTRA2, mitochondrial protein taxon:10090 20161102 ParkinsonsUK-UCL `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`MGI MGI:1915600 Mul1 involved_in GO:1904925 PMID:24709290 IMP P Mitochondrial ubiquitin ligase activator of NFKB 1 protein taxon:10090 20161102 ParkinsonsUK-UCL `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 4

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1921256 Dnm1l enables GO:0042803 PMID:20585624 IPI UniProtKB:Q8K1M6 F Dynamin-1-like protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:11564758 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:15533940 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:18790740 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `