Group: paint - Dataset: paint_ecocyc
SUMMARY
This report generated on 2024-10-22
- Associations: 6051
- Lines in file (incl headers): 6064
- Lines skipped: 7
!gaf-version: 2.2
!Created on Mon Sep 23 12:29:03 2024.
!generated-by: PANTHER
!date-generated: 2024-09-23
!PANTHER version: v.19.0.
!GO version: 2024-06-17.
Contents
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gorule-0000063
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other
MESSAGES
gorule-0000002
No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'
gorule-0000005
IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''
gorule-0000006
IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC
gorule-0000007
IPI should not be used with GO:0003824 catalytic activity or descendents
gorule-0000008
No annotations should be made to uninformative high level terms
gorule-0000011
ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
gorule-0000013
Taxon-appropriate annotation check
gorule-0000015
Dual species taxon check
gorule-0000016
With/From: IC annotations require a With/From GO ID
gorule-0000017
IDA annotations must not have a With/From entry
gorule-0000018
IPI annotations require a With/From entry
gorule-0000020
Automatic repair of annotations to merged or obsoleted terms
Messages
- ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0003867) --
UniProtKB P50457 puuE enables GO:0003867 GO_REF:0000033 IBA PANTHER:PTN000944876|UniProtKB:P94427|UniProtKB:P80404|PomBase:SPAC19D5.07|UniProtKB:P22256|UniProtKB:P50457|SGD:S000003251 F 4-aminobutyrate aminotransferase PuuE UniProtKB:P50457|PTN000944968 protein taxon:83333 20240919 GO_Central
- ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0003867) --
UniProtKB P22256 gabT enables GO:0003867 GO_REF:0000033 IBA PANTHER:PTN000944876|UniProtKB:P94427|UniProtKB:P80404|PomBase:SPAC19D5.07|UniProtKB:P22256|UniProtKB:P50457|SGD:S000003251 F 4-aminobutyrate aminotransferase GabT UniProtKB:P22256|PTN000944969 protein taxon:83333 20240919 GO_Central
- ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0019391) --
UniProtKB P05804 uidA involved_in GO:0019391 GO_REF:0000033 IBA PANTHER:PTN004122708|MGI:MGI:95872|UniProtKB:P05804 P Beta-glucuronidase UniProtKB:P05804|PTN001296252 protein taxon:83333 20190815 GO_Central
- ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052665) --
UniProtKB P0AE01 trmJ enables GO:0052665 GO_REF:0000033 IBA PANTHER:PTN000247326|UniProtKB:P0AE01 F tRNA (cytidine_uridine-2'-O-)-methyltransferase TrmJ UniProtKB:P0AE01|PTN000947742 protein taxon:83333 20170228 GO_Central
- ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052665) --
UniProtKB P37005 lasT enables GO:0052665 GO_REF:0000033 IBA PANTHER:PTN000247326|UniProtKB:P0AE01 F Uncharacterized tRNA_rRNA methyltransferase LasT UniProtKB:P37005|PTN000247338 protein taxon:83333 20170228 GO_Central
- ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0052665) --
UniProtKB P0AGJ7 trmL enables GO:0052665 GO_REF:0000033 IBA PANTHER:PTN000247318|UniProtKB:P0AGJ7 F tRNA (cytidine(34)-2'-O)-methyltransferase UniProtKB:P0AGJ7|PTN000947666 protein taxon:83333 20230720 GO_Central
- ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0097304) --
UniProtKB P00804 lspA involved_in GO:0097304 GO_REF:0000033 IBA PANTHER:PTN002134743|UniProtKB:P00804 P Lipoprotein signal peptidase UniProtKB:P00804|PTN002134787 protein taxon:83333 20240827 GO_Central
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0004024) --
UniProtKB P25437 frmA enables GO:0004024 GO_REF:0000033 IBA PANTHER:PTN000191653|UniProtKB:P08319|UniProtKB:P00325|MGI:MGI:1349472|UniProtKB:P25437|UniProtKB:P40394|UniProtKB:P07327 F S-(hydroxymethyl)glutathione dehydrogenase UniProtKB:P25437|PTN000914946 protein taxon:83333 20181004 GO_Central
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0008272) --
UniProtKB P16676 cysA involved_in GO:0008272 GO_REF:0000033 IBA PANTHER:PTN000655803|UniProtKB:P9WQM1 P Sulfate_thiosulfate import ATP-binding protein CysA UniProtKB:P16676|PTN000655820 protein taxon:83333 20170420 GO_Central
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0019516) --
UniProtKB P06149 dld involved_in GO:0019516 GO_REF:0000033 IBA PANTHER:PTN000202405|UniProtKB:P06149 P Quinone-dependent D-lactate dehydrogenase UniProtKB:P06149|PTN001367983 protein taxon:83333 20170228 GO_Central
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0044255) --
UniProtKB P45524 yheT involved_in GO:0044255 GO_REF:0000033 IBA PANTHER:PTN000082644|UniProtKB:P08910|SGD:S000004823|MGI:MGI:2147183|SGD:S000006016|UniProtKB:Q8WU67|SGD:S000000381 P Putative esterase YheT UniProtKB:P45524|PTN000082836 protein taxon:83333 20200807 GO_Central
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0045226) --
UniProtKB P37760 rfbD involved_in GO:0045226 GO_REF:0000033 IBA PANTHER:PTN000051855|UniProtKB:P9WH09|UniProtKB:P26392 P dTDP-4-dehydrorhamnose reductase UniProtKB:P37760|PTN001313665 protein taxon:83333 20180619 GO_Central
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0045226) --
UniProtKB P37745 rfbC involved_in GO:0045226 GO_REF:0000033 IBA PANTHER:PTN000471594|UniProtKB:P26394|UniProtKB:P9WH11 P dTDP-4-dehydrorhamnose 3,5-epimerase UniProtKB:P37745|PTN001464550 protein taxon:83333 20210305 GO_Central
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0045226) --
UniProtKB P37751 wbbK involved_in GO:0045226 GO_REF:0000033 IBA PANTHER:PTN000749272|UniProtKB:Q9I1N0 P Putative glycosyltransferase WbbK UniProtKB:P37751|PTN000283102 protein taxon:83333 20240229 GO_Central
- WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0052857) --
UniProtKB P31806 nnr enables GO:0052857 GO_REF:0000033 IBA PANTHER:PTN000287613|UniProtKB:P31806 F Bifunctional NAD(P)H-hydrate repair enzyme Nnr UniProtKB:P31806|PTN000287628 protein taxon:83333 20191128 GO_Central
gorule-0000022
Check for, and filter, annotations made to retracted publications
gorule-0000028
GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect
gorule-0000029
IEAs should be less than one year old.
gorule-0000030
Obsolete GO_REFs are not allowed
gorule-0000037
IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference
gorule-0000039
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
gorule-0000042
Qualifier: IKR evidence code requires a NOT qualifier
gorule-0000043
Check for valid combination of evidence code and GO_REF
gorule-0000046
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
gorule-0000050
Annotations to ISS, ISA and ISO should not be self-referential
gorule-0000055
References should have only one ID per ID space
gorule-0000058
Object extensions should conform to the extensions-patterns.yaml file in metadata
gorule-0000061
Allowed gene product to term relations (gp2term)
gorule-0000063
Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)
gorule-0000064
TreeGrafter IEAs should be filtered for GO reference species
other
GO:0008645 hexose transmembrane transport AnnotationPropagation P GO:0005412 D-glucose:sodium symporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0005412 D-glucose:sodium symporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004396 hexokinase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0035312 5'-3' DNA exonuclease activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0009245 lipid A biosynthetic process IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0015159 polysaccharide transmembrane transporter activity IBA
GO:0015774 polysaccharide transport AnnotationPropagation P GO:0015159 polysaccharide transmembrane transporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0015144 carbohydrate transmembrane transporter activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity AnnotationPropagation P GO:0051500 D-tyrosyl-tRNA(Tyr) deacylase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0098531 ligand-activated transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0009037 tyrosine-based site-specific recombinase activity IBA
GO:0035444 nickel cation transmembrane transport AnnotationPropagation P GO:0015099 nickel cation transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IBA
GO:0015811 L-cystine transport AnnotationPropagation P GO:0015184 L-cystine transmembrane transporter activity IBA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015184 L-cystine transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0015159 polysaccharide transmembrane transporter activity IBA
GO:0015774 polysaccharide transport AnnotationPropagation P GO:0015159 polysaccharide transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0071422 succinate transmembrane transport AnnotationPropagation P GO:0015141 succinate transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015386 potassium:proton antiporter activity IBA
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0015386 potassium:proton antiporter activity IBA
GO:0015811 L-cystine transport AnnotationPropagation P GO:0015184 L-cystine transmembrane transporter activity IBA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015184 L-cystine transmembrane transporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0015909 long-chain fatty acid transport AnnotationPropagation P GO:0015483 long-chain fatty acid transporting porin activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015483 long-chain fatty acid transporting porin activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004362 glutathione-disulfide reductase (NADPH) activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1902603 carnitine transmembrane transport AnnotationPropagation P GO:0015226 carnitine transmembrane transporter activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0006269 DNA replication, synthesis of primer AnnotationPropagation P GO:0003896 DNA primase activity IBA
GO:0015724 formate transport AnnotationPropagation P GO:0015499 formate transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015499 formate transmembrane transporter activity IBA
GO:1903716 guanine transmembrane transport AnnotationPropagation P GO:0015208 guanine transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006591 ornithine metabolic process AnnotationPropagation P GO:0004585 ornithine carbamoyltransferase activity IBA
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:2000142 regulation of DNA-templated transcription initiation AnnotationPropagation P GO:0016987 sigma factor activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0070041 rRNA (uridine-C5-)-methyltransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015562 efflux transmembrane transporter activity IBA
GO:0015804 neutral amino acid transport AnnotationPropagation P GO:0015190 L-leucine transmembrane transporter activity IBA
GO:0015803 branched-chain amino acid transport AnnotationPropagation P GO:0015190 L-leucine transmembrane transporter activity IBA
GO:0015695 organic cation transport AnnotationPropagation P GO:0015190 L-leucine transmembrane transporter activity IBA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015190 L-leucine transmembrane transporter activity IBA
GO:0042780 tRNA 3'-end processing AnnotationPropagation P GO:0042781 3'-tRNA processing endoribonuclease activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0003872 6-phosphofructokinase activity IBA
GO:0061615 glycolytic process through fructose-6-phosphate AnnotationPropagation P GO:0003872 6-phosphofructokinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004335 galactokinase activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0008443 phosphofructokinase activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015295 solute:proton symporter activity IBA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0003678 DNA helicase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0046710 GDP metabolic process AnnotationPropagation P GO:0004385 guanylate kinase activity IBA
GO:0046037 GMP metabolic process AnnotationPropagation P GO:0004385 guanylate kinase activity IBA
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004385 guanylate kinase activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0006665 sphingolipid metabolic process IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0033863 ribose 1,5-bisphosphate phosphokinase activity IBA
GO:0001676 long-chain fatty acid metabolic process AnnotationPropagation P GO:0004467 long-chain fatty acid-CoA ligase activity IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IBA
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0015079 potassium ion transmembrane transporter activity IBA
GO:0061727 methylglyoxal catabolic process to lactate AnnotationPropagation P GO:0019172 glyoxalase III activity IBA
GO:0019249 lactate biosynthetic process AnnotationPropagation P GO:0019172 glyoxalase III activity IBA
GO:0042350 GDP-L-fucose biosynthetic process AnnotationPropagation P GO:0050577 GDP-L-fucose synthase activity IBA
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004127 (d)CMP kinase activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0001216 DNA-binding transcription activator activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0035429 gluconate transmembrane transport AnnotationPropagation P GO:0015128 gluconate transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1904823 purine nucleobase transmembrane transport AnnotationPropagation P GO:0042907 xanthine transmembrane transporter activity IBA
GO:0042906 xanthine transport AnnotationPropagation P GO:0042907 xanthine transmembrane transporter activity IBA
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0042937 tripeptide transmembrane transporter activity IBA
GO:0042939 tripeptide transport AnnotationPropagation P GO:0042937 tripeptide transmembrane transporter activity IBA
GO:0001522 pseudouridine synthesis AnnotationPropagation P GO:0004730 pseudouridylate synthase activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0009247 glycolipid biosynthetic process IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0034040 ATPase-coupled lipid transmembrane transporter activity IBA
GO:0006869 lipid transport AnnotationPropagation P GO:0034040 ATPase-coupled lipid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0016150 translation release factor activity, codon nonspecific IBA
GO:0006415 translational termination AnnotationPropagation P GO:0016150 translation release factor activity, codon nonspecific IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0016150 translation release factor activity, codon nonspecific IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004130 cytochrome-c peroxidase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015333 peptide:proton symporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0035429 gluconate transmembrane transport AnnotationPropagation P GO:0015128 gluconate transmembrane transporter activity IBA
GO:0035429 gluconate transmembrane transport AnnotationPropagation P GO:0015128 gluconate transmembrane transporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0035429 gluconate transmembrane transport AnnotationPropagation P GO:0015128 gluconate transmembrane transporter activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0015861 cytidine transport AnnotationPropagation P GO:0015212 cytidine transmembrane transporter activity IBA
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0015212 cytidine transmembrane transporter activity IBA
GO:0072531 pyrimidine-containing compound transmembrane transport AnnotationPropagation P GO:0015212 cytidine transmembrane transporter activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0001216 DNA-binding transcription activator activity IBA
GO:0072488 ammonium transmembrane transport AnnotationPropagation P GO:0008519 ammonium channel activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004520 DNA endonuclease activity IBA
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0008556 P-type potassium transmembrane transporter activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004396 hexokinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0098531 ligand-activated transcription factor activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0042823 pyridoxal phosphate biosynthetic process AnnotationPropagation P GO:0004733 pyridoxamine phosphate oxidase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015562 efflux transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0045127 N-acetylglucosamine kinase activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0001216 DNA-binding transcription activator activity IBA
GO:0015887 pantothenate transmembrane transport AnnotationPropagation P GO:0015233 pantothenate transmembrane transporter activity IBA
GO:1904823 purine nucleobase transmembrane transport AnnotationPropagation P GO:0015207 adenine transmembrane transporter activity IBA
GO:0015853 adenine transport AnnotationPropagation P GO:0015207 adenine transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015562 efflux transmembrane transporter activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0045145 single-stranded DNA 5'-3' DNA exonuclease activity IBA
GO:0015724 formate transport AnnotationPropagation P GO:0015499 formate transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015499 formate transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0005298 proline:sodium symporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0005298 proline:sodium symporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0005298 proline:sodium symporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015297 antiporter activity IBA
GO:0070574 cadmium ion transmembrane transport AnnotationPropagation P GO:0015086 cadmium ion transmembrane transporter activity IBA
GO:0006750 glutathione biosynthetic process AnnotationPropagation P GO:0004363 glutathione synthase activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004536 DNA nuclease activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:1990238 double-stranded DNA endonuclease activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015836 lipid-linked peptidoglycan transport AnnotationPropagation P GO:0015648 lipid-linked peptidoglycan transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015648 lipid-linked peptidoglycan transporter activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0017108 5'-flap endonuclease activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0009009 site-specific recombinase activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity IBA
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0015749 monosaccharide transmembrane transport AnnotationPropagation P GO:0015134 hexuronate transmembrane transporter activity IBA
GO:0015736 hexuronate transmembrane transport AnnotationPropagation P GO:0015134 hexuronate transmembrane transporter activity IBA
GO:0015778 hexuronide transmembrane transport AnnotationPropagation P GO:0015134 hexuronate transmembrane transporter activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0071577 zinc ion transmembrane transport AnnotationPropagation P GO:0005385 zinc ion transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004791 thioredoxin-disulfide reductase (NADPH) activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0009675 high-affinity sulfate:proton symporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0009675 high-affinity sulfate:proton symporter activity IBA
GO:0033214 siderophore-dependent iron import into cell AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IBA
GO:0044718 siderophore transmembrane transport AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0009245 lipid A biosynthetic process IBA
GO:0015861 cytidine transport AnnotationPropagation P GO:0015212 cytidine transmembrane transporter activity IBA
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0015212 cytidine transmembrane transporter activity IBA
GO:0072531 pyrimidine-containing compound transmembrane transport AnnotationPropagation P GO:0015212 cytidine transmembrane transporter activity IBA
GO:1904981 maltose transmembrane transport AnnotationPropagation P GO:0015423 ABC-type maltose transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004529 DNA exonuclease activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0033214 siderophore-dependent iron import into cell AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IBA
GO:0044718 siderophore transmembrane transport AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IBA
GO:0019344 cysteine biosynthetic process AnnotationPropagation P GO:0004124 cysteine synthase activity IBA
GO:0009086 methionine biosynthetic process AnnotationPropagation P GO:0008705 methionine synthase activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0015505 uracil:monoatomic cation symporter activity IBA
GO:1903791 uracil transmembrane transport AnnotationPropagation P GO:0015505 uracil:monoatomic cation symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0070041 rRNA (uridine-C5-)-methyltransferase activity IBA
GO:0090150 establishment of protein localization to membrane AnnotationPropagation P GO:0032977 membrane insertase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004798 thymidylate kinase activity IBA
GO:0006222 UMP biosynthetic process AnnotationPropagation P GO:0004849 uridine kinase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0005315 phosphate transmembrane transporter activity IBA
GO:0015698 inorganic anion transport AnnotationPropagation P GO:0005315 phosphate transmembrane transporter activity IBA
GO:0034755 iron ion transmembrane transport AnnotationPropagation P GO:0015093 ferrous iron transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006761 dihydrofolate biosynthetic process AnnotationPropagation P GO:0008841 dihydrofolate synthase activity IBA
GO:1903716 guanine transmembrane transport AnnotationPropagation P GO:0015208 guanine transmembrane transporter activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0046583 monoatomic cation efflux transmembrane transporter activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004601 peroxidase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0015826 threonine transport AnnotationPropagation P GO:0015565 threonine efflux transmembrane transporter activity IBA
GO:0015695 organic cation transport AnnotationPropagation P GO:0015565 threonine efflux transmembrane transporter activity IBA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015565 threonine efflux transmembrane transporter activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA