| Rule | AgBase | Alzheimers_University_of_Toronto | ARUK-UCL | BHF-UCL | CACAO | CAFA | ComplexPortal | DisProt | Ensembl | GO_Central | HGNC-UCL | InterPro | ParkinsonsUK-UCL | SynGO | UniProt |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GAF lines are parsed according to GAF 2.2 specifications: gorule-0000001 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 57 | 0 | 0 | 0 | 0 | 0 |
|
IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding'': gorule-0000005 |
1 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 22 |
|
IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC: gorule-0000006 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 447 | 0 |
|
No annotations should be made to uninformative high level terms: gorule-0000008 |
2 | 0 | 4 | 10 | 1 | 0 | 0 | 0 | 0 | 3581 | 3 | 0 | 6 | 0 | 125 |
|
Dual species taxon check: gorule-0000015 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 33 | 0 | 0 | 0 | 0 | 2 |
|
With/From: IC annotations require a With/From GO ID: gorule-0000016 |
0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
|
IPI annotations require a With/From entry: gorule-0000018 |
0 | 0 | 0 | 0 | 0 | 0 | 130 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
|
Automatic repair of annotations to merged or obsoleted terms: gorule-0000020 |
0 | 0 | 6 | 4 | 0 | 0 | 0 | 0 | 40 | 5789 | 0 | 4 | 10 | 0 | 30 |
|
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.: gorule-0000046 |
1 | 0 | 3 | 24 | 0 | 2 | 0 | 3 | 278 | 1414 | 12 | 57 | 4 | 0 | 422 |
|
Annotations to ISS, ISA and ISO should not be self-referential: gorule-0000050 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
Allowed gene product to term relations (gp2term): gorule-0000061 |
0 | 1 | 2 | 3 | 110 | 0 | 1177 | 1 | 0 | 12782 | 0 | 0 | 0 | 0 | 207 |
|
Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column): gorule-0000063 |
0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 |