GO Rule Violations by Assignment

Generated on 2024-10-21
Rule AgBase Alzheimers_University_of_Toronto ARUK-UCL BHF-UCL CACAO CAFA ComplexPortal DisProt Ensembl GO_Central GOC HGNC HGNC-UCL InterPro ParkinsonsUK-UCL RHEA SynGO UniProt

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding'':
gorule-0000005

1 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 22

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC:
gorule-0000006

0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 447 0

No annotations should be made to uninformative high level terms:
gorule-0000008

2 0 4 9 1 0 0 0 0 3458 0 0 3 0 6 0 0 125

Dual species taxon check:
gorule-0000015

0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 2

With/From: IC annotations require a With/From GO ID:
gorule-0000016

0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

IPI annotations require a With/From entry:
gorule-0000018

0 0 0 0 0 0 130 0 0 0 0 0 0 0 0 0 0 0

Automatic repair of annotations to merged or obsoleted terms:
gorule-0000020

0 0 6 6 0 1 0 0 104 9048 2 2 0 11 10 9 0 173

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.:
gorule-0000046

1 0 3 24 0 2 0 3 278 1364 0 0 12 57 4 0 0 422

Annotations to ISS, ISA and ISO should not be self-referential:
gorule-0000050

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Allowed gene product to term relations (gp2term):
gorule-0000061

0 1 2 3 110 0 1178 1 0 13182 0 0 0 0 0 0 0 207

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column):
gorule-0000063

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3